- Overall user interface
- This flash movie describes the basic components of the Gemstone interface, the services
registry, the local file store, and the service panels.
NOTE: authentication is currently not required. Authentication is done through GAMA (Grid
Account Managment Architecture, http://grid-devel.sdsc.edu/gama). The user must already
have a GAMA login and password. The login button connects to a GAMA server (location of
the server can be set in Options) and authenticates the user. If successful, the Gemstone
client stores a X509 GSI credential for the user and uses this for subsequent Grid Service
- Basic use of APBS
- This flash movie shows how to use Gemstone to access the APBS Grid Service. In particular
it shows how to calcualte the binding energy of a molecule with a ligand.
- Integration across quantum and classical techniques
- This flash movie shows integration across applications, specifically, a protein and ligand are
downloaded from the PDB, then the ligand is rotated, and its charges are calculated using
quantum techniques through gamess. The protein is processed using PDB2PQR and the binding
energy between the ligand and protein is caluclated using APBS.
The gemstone project can be contacted through the mailing list or the member list.
Copyright © 2000-2017. All rights reserved.